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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID |
strand
|
start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2052 | - | 228107 | 90 | 24 | -26.7 | NP_040122 | 5' arm 3' arm | ||
| 2038 | - | 217502 | 87 | 19.5 | -27.4 | NP_040111 | 5' arm 3' arm | ||
| 2031 | - | 213264 | 85 | 22 | -25.9 | NP_040108 | 5' arm 3' arm | ||
| 29988 | - | 2252 | 90 | 20 | -24.2 | YP_081455 | 5' arm 3' arm | ||
| 2050 | - | 225412 | 89 | 20 | -22.2 | 5' arm 3' arm | |||
| 2055 | - | 229380 | 89 | 19 | -19.5 | NP_040085 | 5' arm 3' arm | ||
| 2049 | - | 224853 | 89 | 21 | -24.8 | NP_040117 | 5' arm 3' arm | ||
| 2048 | - | 223207 | 89 | 20.5 | -22.5 | NP_040115 | 5' arm 3' arm | ||
| 2041 | - | 221098 | 89 | 20 | -22.1 | NP_783808 | 5' arm 3' arm | ||
| 2039 | - | 218288 | 89 | 20 | -26.9 | NP_040111 | 5' arm 3' arm | ||
| 2047 | - | 222848 | 89 | 19 | -27.1 | NP_040115 | 5' arm 3' arm | ||
| 2045 | - | 222416 | 90 | 20.5 | -28.1 | NP_040114 | 5' arm 3' arm | ||
| 2053 | - | 228557 | 89 | 21.5 | -33.1 | NP_040085 | 5' arm 3' arm | ||
| 2043 | - | 221653 | 89 | 19 | -26.8 | NP_040114 | 5' arm 3' arm | ||
| 2051 | - | 227296 | 90 | 21.5 | -20 | NP_040122 | 5' arm 3' arm | ||
| 2046 | - | 222669 | 90 | 20.5 | -19.4 | NP_040115 | 5' arm 3' arm | ||
| 2040 | - | 220139 | 89 | 21.5 | -27.6 | 5' arm 3' arm | |||
| 2034 | - | 214314 | 87 | 22 | -23.2 | NP_040108 | 5' arm 3' arm | ||
| 2054 | - | 229166 | 90 | 21 | -20.2 | NP_040122 | 5' arm 3' arm | ||
| 2044 | - | 221928 | 87 | 22.5 | -27.6 | NP_040114 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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