miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628290 NC_001664.1 Human herpesvirus 6

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4165 + 157651 88 23 -24 NP_043001 5' arm      3' arm
4160 + 152204 87 19 -24.5 NP_042996 5' arm      3' arm
4150 + 9499 87 21.5 -24.8 NP_042893 5' arm      3' arm
4146 + 5604 82 19 -22.3 NP_042889 5' arm      3' arm
4149 + 7011 88 19.5 -23 5' arm      3' arm
4148 + 6573 89 20 -27.7 NP_043001 5' arm      3' arm
4147 + 6418 88 23 -24 NP_042889 5' arm      3' arm
4144 + 4278 86 19 -19.6 5' arm      3' arm
4142 + 971 87 19 -24.5 NP_042884 5' arm      3' arm
4143 + 1412 88 19.5 -22.9 NP_042996 5' arm      3' arm
4151 + 77696 90 19.5 -24.9 NP_042940 5' arm      3' arm
4152 + 88027 85 22 -32.3 NP_042948 5' arm      3' arm
4161 + 152645 88 19.5 -22.9 NP_042884 5' arm      3' arm
4159 + 150005 87 23 -23.9 NP_042993 5' arm      3' arm
4158 + 141549 89 23 -20 NP_042987 5' arm      3' arm
4157 + 134476 81 21 -21 NP_042982 5' arm      3' arm
4155 + 127734 90 24.5 -22 NP_042979 5' arm      3' arm
4156 + 127975 87 27.5 -25.2 NP_042979 5' arm      3' arm
4154 + 108296 87 19 -22.2 NP_042966 5' arm      3' arm
4153 + 90838 89 23 -22.7 NP_042950 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.