miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
82503188 NC_007605.1 Human herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33384 + 147524 86 24 -22.1 ebv-mir-BART11 5' arm      
33383 + 147304 90 30 -26.5 ebv-mir-BART10       3' arm
33371 + 139335 89 23 -23.6 ebv-mir-BART1 5' arm      3' arm
33298 + 52754 90 23 -22.1 YP_401652 5' arm      3' arm
33293 + 50723 87 22.5 -27.1 YP_401652 5' arm      3' arm
33424 - 1980 89 21 -23.8 YP_401633 5' arm      3' arm
33297 + 52331 88 23 -28.7 YP_401652 5' arm      3' arm
33289 + 48187 88 19 -21.1 YP_401650 5' arm      3' arm
33287 + 45981 88 20 -22.1 YP_401648 5' arm      3' arm
33272 + 7934 90 26 -24.2 5' arm      3' arm
33270 + 5251 88 20 -26.4 YP_401633 5' arm      3' arm
33275 + 35971 89 20.5 -20.89 5' arm      3' arm
33276 + 40081 90 22.5 -26 YP_401645 5' arm      3' arm
33277 + 40749 90 21 -24.5 5' arm      3' arm
33273 + 9009 86 28 -35 5' arm      3' arm
33283 + 44019 79 20.5 -26.1 YP_401647 5' arm      3' arm
33286 + 45160 90 19.5 -21.2 YP_401648 5' arm      3' arm
33288 + 47652 88 23 -22.3 YP_401650 5' arm      3' arm
33290 + 48433 85 21 -21.3 YP_401650 5' arm      3' arm
33291 + 49409 89 20.5 -28.8 YP_401651 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.