miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
10217	+	108361	90	20.5	-21.9	NP_076572		5' arm      3' arm
10215	+	104922	89	20	-20.6	NP_076569		5' arm      3' arm
10216	+	105156	89	25.5	-23.6	NP_076569		5' arm      3' arm
10214	+	102334	86	20	-26.71	NP_076568		5' arm      3' arm
10213	+	100059	90	19.5	-21.5	NP_076567		5' arm      3' arm
10211	+	97173	89	24	-23.2	NP_076563		5' arm      3' arm
10210	+	97068	83	22.5	-28.3	NP_076563		5' arm      3' arm
10229	-	83593	90	20	-21.7	NP_076556		5' arm      3' arm
10230	-	86295	90	23	-28.8	NP_076556		5' arm      3' arm
10209	+	86206	90	20	-23	NP_076556		5' arm      3' arm
10231	-	87993	87	19.5	-29.2	NP_076556		5' arm      3' arm
10228	-	80555	90	21	-28	NP_076555		5' arm      3' arm
10208	+	72312	88	19.5	-21.9	NP_076549		5' arm      3' arm
10207	+	68407	90	24	-23.3	NP_076547		5' arm      3' arm
10227	-	64948	77	21	-20.9	NP_076541		5' arm      3' arm
10206	+	59341	90	21	-21.7	NP_076537		5' arm      3' arm
10226	-	28584	90	20	-22	NP_076513		5' arm      3' arm
10204	+	26127	83	24.5	-21.6	NP_076511		5' arm      3' arm
10205	+	26472	90	21	-21	NP_076511		5' arm      3' arm
10203	+	23760	89	21.5	-25.6	NP_076509		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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