miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
166	+	10069	75	21	-27.3	AP_000167		5' arm      3' arm
167	+	10422	90	21	-24	AP_000167		5' arm      3' arm
165	+	8658	90	21.5	-19.8	AP_000167		5' arm      3' arm
184	-	11153	90	23	-29.2	AP_000168		5' arm      3' arm
189	-	13765	87	21	-20	AP_000169		5' arm      3' arm
170	+	13269	88	19.5	-22.5	AP_000169		5' arm      3' arm
187	-	13108	90	20.5	-27.2	AP_000169		5' arm      3' arm
190	-	13940	90	20	-26.7	AP_000169		5' arm      3' arm
186	-	12655	86	22.5	-29.7	AP_000169		5' arm      3' arm
188	-	13645	89	19	-25.1	AP_000169		5' arm      3' arm
185	-	12462	89	20	-21.5	AP_000169		5' arm      3' arm
191	-	15522	89	21.5	-22.6	AP_000170		5' arm      3' arm
171	+	16312	88	23	-23.9	AP_000171		5' arm      3' arm
192	-	17030	89	20.5	-20.2	AP_000172		5' arm      3' arm
172	+	17120	86	20	-20.7	AP_000172		5' arm      3' arm
194	-	17563	89	21.5	-25.6	AP_000172		5' arm      3' arm
173	+	17207	88	19	-25.6	AP_000172		5' arm      3' arm
193	-	17262	81	21.5	-21.1	AP_000172		5' arm      3' arm
195	-	18400	90	19	-32.4	AP_000174		5' arm      3' arm
196	-	18501	88	22	-20.7	AP_000174		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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