miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
181	-	6418	86	20	-22.8	AP_000166		5' arm      3' arm
200	-	20928	89	20.5	-19.6	AP_000175		5' arm      3' arm
163	+	7591	85	20.5	-23.5	AP_000166		5' arm      3' arm
192	-	17030	89	20.5	-20.2	AP_000172		5' arm      3' arm
187	-	13108	90	20.5	-27.2	AP_000169		5' arm      3' arm
205	-	25306	89	20.5	-24.1	AP_000178		5' arm      3' arm
202	-	23559	88	20.5	-22	AP_000177		5' arm      3' arm
168	+	10629	89	20.5	-36.3			5' arm      3' arm
207	-	26441	89	20.5	-26.6	AP_000179		5' arm      3' arm
174	+	19029	90	20.5	-20	AP_000175		5' arm      3' arm
182	-	9095	86	20.5	-25.6	AP_000167		5' arm      3' arm
177	+	25038	87	20.5	-23.4	AP_000178		5' arm      3' arm
179	-	2179	87	21	-30.6	AP_000162		5' arm      3' arm
167	+	10422	90	21	-24	AP_000167		5' arm      3' arm
189	-	13765	87	21	-20	AP_000169		5' arm      3' arm
166	+	10069	75	21	-27.3	AP_000167		5' arm      3' arm
180	-	5846	88	21	-20.2	AP_000166		5' arm      3' arm
194	-	17563	89	21.5	-25.6	AP_000172		5' arm      3' arm
193	-	17262	81	21.5	-21.1	AP_000172		5' arm      3' arm
191	-	15522	89	21.5	-22.6	AP_000170		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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