miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27328	-	54614	90	21	-27.4			5' arm      3' arm
27314	-	9693	89	21	-22			5' arm      3' arm
27289	+	15292	89	21	-20.4	YP_006479		5' arm      3' arm
27297	+	36373	89	21.5	-24.9	YP_006502		5' arm      3' arm
27322	-	32332	89	21.5	-24.9	YP_006502		5' arm      3' arm
27292	+	31838	87	21.5	-19.4	YP_006499		5' arm      3' arm
27291	+	17738	89	21.5	-24.5	YP_006480		5' arm      3' arm
27309	+	90952	89	21.5	-22.2	YP_006575		5' arm      3' arm
27323	-	34233	90	22	-20	YP_006500		5' arm      3' arm
27319	-	30683	88	22	-23.7	YP_006496		5' arm      3' arm
27310	+	92589	89	22	-22.1	YP_006576		5' arm      3' arm
27290	+	17499	86	22	-19.7	YP_006480		5' arm      3' arm
27306	+	70699	90	22	-22.4	YP_006541		5' arm      3' arm
27330	-	82563	87	22	-37.4	YP_006559		5' arm      3' arm
27300	+	48802	89	22	-22.3	YP_006515		5' arm      3' arm
27293	+	32595	88	22.5	-20.1	YP_006502		5' arm      3' arm
27295	+	34144	90	22.5	-19.8	YP_006500		5' arm      3' arm
27284	+	102	89	22.5	-29.6			5' arm      3' arm
27308	+	79641	85	22.5	-25	YP_006554		5' arm      3' arm
27311	+	94080	89	22.5	-28.3			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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