miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2329	+	2478	90	21.5	-26.1	NP_040581		5' arm      3' arm
2343	+	10855	90	22	-22.9	NP_040595		5' arm      3' arm
2341	+	10540	89	21	-30.7	NP_040595		5' arm      3' arm
2349	+	14329	89	20.5	-25.4	NP_040598		5' arm      3' arm
2355	+	17576	90	20.5	-24.4	NP_040600		5' arm      3' arm
2348	+	14183	89	20	-23.7			5' arm      3' arm
2352	+	17139	83	19.5	-21.3	NP_040600		5' arm      3' arm
2347	+	13914	90	19	-20.8	NP_040597		5' arm      3' arm
2353	+	17297	88	19	-22.21	NP_040600		5' arm      3' arm
2351	+	15692	88	21.5	-24.2	NP_040600		5' arm      3' arm
2350	+	14592	90	21.5	-27	NP_040598		5' arm      3' arm
2356	+	18594	84	22.5	-26.9	NP_040600		5' arm      3' arm
2359	+	24134	90	23	-24.6			5' arm      3' arm
2360	+	30832	79	19.5	-20.7	NP_040613		5' arm      3' arm
2361	+	36332	90	21	-27	NP_040627		5' arm      3' arm
2362	+	39881	90	19	-23.2	NP_040632		5' arm      3' arm
2363	+	44780	89	23	-20			5' arm      3' arm
2364	+	46874	90	19.5	-25.23			5' arm      3' arm
2344	+	11901	90	20.5	-23.3	NP_040595		5' arm      3' arm
2342	+	10752	89	20.5	-20.2	NP_040595		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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