miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8094 + 13535 90 21.5 -20.4 NP_047937 5' arm      3' arm
8089 + 9465 90 21.5 -23.1 NP_047934 5' arm      3' arm
8081 + 7049 89 21.5 -27.6 NP_047930 5' arm      3' arm
8087 + 9045 88 22.5 -25.2 NP_047934 5' arm      3' arm
8079 + 6523 90 22.5 -27.7 NP_047929 5' arm      3' arm
8086 + 8681 79 23.5 -37.1 NP_047932 5' arm      3' arm
8080 + 6755 85 23.5 -19.7 NP_047929 5' arm      3' arm
8072 + 1506 88 20.5 -19.8 NP_047924 5' arm      3' arm
8073 + 1694 89 22 -30.4 NP_047924 5' arm      3' arm
8075 + 4574 90 22.5 -29.2 5' arm      3' arm
8082 + 7382 86 21.5 -20.1 NP_047930 5' arm      3' arm
8078 + 6299 90 21 -25.7 NP_047928 5' arm      3' arm
8090 + 10213 81 23 -21.3 NP_047934 5' arm      3' arm
8093 + 12860 84 24 -32 NP_047936 5' arm      3' arm
8084 + 7880 90 19.5 -25.7 NP_047930 5' arm      3' arm
8083 + 7519 87 19.5 -28.2 NP_047930 5' arm      3' arm
8076 + 5260 89 19.5 -23.1 NP_047927 5' arm      3' arm
8088 + 9351 90 20 -19.9 NP_047934 5' arm      3' arm
8077 + 5901 90 20 -25 NP_047927 5' arm      3' arm
8085 + 7973 89 21 -22.7 NP_047931 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.