miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1030	+	56616	89	28.5	-19.6	NP_049532		5' arm      3' arm
1036	-	13975	88	24.5	-31.1	NP_049488		5' arm      3' arm
1032	+	61094	90	24	-23.8			5' arm      3' arm
1031	+	58662	86	24	-29.8			5' arm      3' arm
1022	+	47608	84	23.5	-23.6	NP_049530		5' arm      3' arm
1047	-	41566	89	23.5	-29.31	NP_049522		5' arm      3' arm
1029	+	56397	90	23.5	-28.2	NP_049532		5' arm      3' arm
1052	-	61452	89	23.5	-27.6			5' arm      3' arm
1042	-	25738	89	23.5	-26.3	NP_049503		5' arm      3' arm
1012	+	33438	89	23	-29.7			5' arm      3' arm
1048	-	50472	88	23	-30.7	NP_049532		5' arm      3' arm
1051	-	55034	90	23	-19.6	NP_049532		5' arm      3' arm
1014	+	36811	89	23	-24.2	NP_049517		5' arm      3' arm
1013	+	34262	88	23	-24	NP_049513		5' arm      3' arm
1027	+	52128	88	23	-24.5	NP_049532		5' arm      3' arm
1015	+	37429	89	22.5	-22.3	NP_049518		5' arm      3' arm
1005	+	20259	87	22.5	-27.1	NP_049499		5' arm      3' arm
1016	+	38160	87	22	-26	NP_049519		5' arm      3' arm
1006	+	23965	86	22	-25.44	NP_049502		5' arm      3' arm
1010	+	26172	86	21.5	-24.9	NP_049505		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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