miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1050	-	51716	87	21.5	-25	NP_049532		5' arm      3' arm
1002	+	7016	90	21.5	-20.7	NP_049474		5' arm      3' arm
1011	+	27501	90	21.5	-28			5' arm      3' arm
1010	+	26172	86	21.5	-24.9	NP_049505		5' arm      3' arm
1039	-	16536	88	21.5	-20	NP_049493		5' arm      3' arm
1004	+	16649	89	21.5	-24.7	NP_049493		5' arm      3' arm
1009	+	26016	85	21.5	-21.9			5' arm      3' arm
1018	+	42527	90	21	-20.6	NP_049523		5' arm      3' arm
1044	-	38499	90	21	-21	NP_049519		5' arm      3' arm
1023	+	49438	86	21	-22.2	NP_049532		5' arm      3' arm
1043	-	27953	90	20.5	-24.1	NP_049507		5' arm      3' arm
1028	+	56199	86	20.5	-31.6	NP_049532		5' arm      3' arm
1017	+	40995	89	20.5	-21.2	NP_049522		5' arm      3' arm
1037	-	14849	87	20.5	-20.3	NP_049489		5' arm      3' arm
1024	+	50008	82	20	-22	NP_049532		5' arm      3' arm
1033	-	4158	90	20	-21.1	NP_049469		5' arm      3' arm
1003	+	14646	85	20	-23.56	NP_049489		5' arm      3' arm
1021	+	46818	89	20	-23.4	NP_049528		5' arm      3' arm
1007	+	25278	90	20	-20.8	NP_049503		5' arm      3' arm
1041	-	24818	86	20	-26.3	NP_049502		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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