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GenBank Identifier | RefSeq Acc. | Name |
9628002 | NC_001650.1 | Equid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
3574 | + | 3224 | 90 | 20 | -23.1 | 5' arm 3' arm | |||
3575 | + | 3918 | 88 | 22.5 | -24.8 | 5' arm 3' arm | |||
3576 | + | 4096 | 89 | 25 | -21.2 | 5' arm 3' arm | |||
3577 | + | 4215 | 81 | 19 | -25.9 | 5' arm 3' arm | |||
3578 | + | 4646 | 86 | 22.5 | -31.4 | 5' arm 3' arm | |||
3579 | + | 5026 | 86 | 23.5 | -23.5 | 5' arm 3' arm | |||
3580 | + | 5627 | 83 | 20.5 | -26.6 | 5' arm 3' arm | |||
3581 | + | 6287 | 88 | 23.5 | -26.3 | 5' arm 3' arm | |||
3582 | + | 6450 | 90 | 21 | -24.4 | 5' arm 3' arm | |||
3583 | + | 7254 | 89 | 19.5 | -25.8 | 5' arm 3' arm | |||
3584 | + | 7602 | 89 | 19 | -22.5 | 5' arm 3' arm | |||
3585 | + | 7931 | 90 | 21.5 | -27.7 | 5' arm 3' arm | |||
3586 | + | 8862 | 90 | 19 | -21.1 | 5' arm 3' arm | |||
3587 | + | 9029 | 88 | 27 | -31 | 5' arm 3' arm | |||
3588 | + | 11109 | 89 | 23.5 | -19.9 | 5' arm 3' arm | |||
3589 | + | 12028 | 89 | 25 | -22.6 | 5' arm 3' arm | |||
3590 | + | 12212 | 87 | 25 | -19.4 | 5' arm 3' arm | |||
3591 | + | 13837 | 87 | 21 | -19.6 | 5' arm 3' arm | |||
3592 | + | 15600 | 89 | 23.5 | -24.3 | 5' arm 3' arm | |||
3593 | + | 18118 | 82 | 23 | -28 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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