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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3780 | + | 143218 | 88 | 22 | -20.24 | NP_042667 | 5' arm 3' arm | ||
| 4020 | - | 143181 | 88 | 21.5 | -27.2 | NP_042667 | 5' arm 3' arm | ||
| 3778 | + | 138328 | 89 | 20.5 | -22.8 | NP_042666 | 5' arm 3' arm | ||
| 3777 | + | 137673 | 90 | 22.5 | -25.3 | NP_042665 | 5' arm 3' arm | ||
| 4016 | - | 137738 | 90 | 19.5 | -24.3 | NP_042665 | 5' arm 3' arm | ||
| 4015 | - | 137470 | 90 | 21 | -23.6 | NP_042664 | 5' arm 3' arm | ||
| 4014 | - | 137172 | 88 | 22.5 | -20.5 | NP_042664 | 5' arm 3' arm | ||
| 3776 | + | 137125 | 90 | 21 | -31.3 | NP_042664 | 5' arm 3' arm | ||
| 3775 | + | 136898 | 85 | 22 | -24.8 | NP_042664 | 5' arm 3' arm | ||
| 3774 | + | 136231 | 83 | 20.5 | -20.2 | NP_042663 | 5' arm 3' arm | ||
| 4010 | - | 135488 | 81 | 22 | -25.3 | NP_042663 | 5' arm 3' arm | ||
| 4012 | - | 136382 | 90 | 24.5 | -24.13 | NP_042663 | 5' arm 3' arm | ||
| 4011 | - | 136084 | 90 | 20 | -24.4 | NP_042663 | 5' arm 3' arm | ||
| 3773 | + | 136000 | 88 | 19 | -30.8 | NP_042663 | 5' arm 3' arm | ||
| 3772 | + | 135513 | 86 | 22 | -24.1 | NP_042663 | 5' arm 3' arm | ||
| 4013 | - | 136713 | 87 | 19 | -22.7 | NP_042663 | 5' arm 3' arm | ||
| 3770 | + | 134955 | 89 | 19.5 | -24.9 | NP_042662 | 5' arm 3' arm | ||
| 4009 | - | 135032 | 89 | 19 | -20.7 | NP_042662 | 5' arm 3' arm | ||
| 3771 | + | 135174 | 89 | 20 | -19.6 | NP_042662 | 5' arm 3' arm | ||
| 3765 | + | 126797 | 90 | 24 | -28.5 | NP_042661 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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