miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25949 - 122424 90 22 -26.6 NP_958031 5' arm      3' arm
25948 - 122308 87 22 -28.4 NP_958031 5' arm      3' arm
25947 - 121781 88 20.5 -22 NP_958031 5' arm      3' arm
25946 - 121634 88 19.5 -22.3 NP_958031 5' arm      3' arm
25945 - 120667 90 20 -28.41 NP_958030 5' arm      3' arm
25944 - 119644 90 22.5 -27.1 NP_958029 5' arm      3' arm
25943 - 118413 88 20 -24.5 NP_958027 5' arm      3' arm
25942 - 118324 86 19 -24.9 5' arm      3' arm
25941 - 117957 90 27.5 -26.5 NP_958026 5' arm      3' arm
25940 - 117740 89 20 -27.7 NP_958026 5' arm      3' arm
25939 - 117158 90 19.5 -34.3 5' arm      3' arm
25938 - 116432 89 20 -21.9 NP_958025 5' arm      3' arm
25937 - 115800 86 19 -26.8 NP_958023 5' arm      3' arm
25936 - 115473 90 21 -26.4 NP_958023 5' arm      3' arm
25935 - 115308 90 22 -19.9 NP_958023 5' arm      3' arm
25934 - 114982 90 19.5 -26.1 NP_958023 5' arm      3' arm
25933 - 114588 89 22.5 -24 NP_958022 5' arm      3' arm
25932 - 112478 88 19 -23.2 NP_958019 5' arm      3' arm
25931 - 110892 86 19.5 -23.1 NP_958017 5' arm      3' arm
25930 - 110260 86 19.5 -32 NP_958015 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.