miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25945 - 120667 90 20 -28.41 NP_958030 5' arm      3' arm
25952 - 124264 85 21.5 -27.9 NP_958032 5' arm      3' arm
25960 - 126484 90 21.5 -20.2 NP_958034 5' arm      3' arm
25966 - 132007 87 21 -21 NP_958038 5' arm      3' arm
25936 - 115473 90 21 -26.4 NP_958023 5' arm      3' arm
25943 - 118413 88 20 -24.5 NP_958027 5' arm      3' arm
25949 - 122424 90 22 -26.6 NP_958031 5' arm      3' arm
25969 - 134388 90 21 -26.7 5' arm      3' arm
25944 - 119644 90 22.5 -27.1 NP_958029 5' arm      3' arm
25965 - 131056 89 22.5 -23.2 NP_958038 5' arm      3' arm
25948 - 122308 87 22 -28.4 NP_958031 5' arm      3' arm
25953 - 124377 90 19.5 -21.41 NP_958032 5' arm      3' arm
25958 - 126070 90 19 -25.8 NP_958034 5' arm      3' arm
25961 - 128811 90 20.5 -26 NP_958036 5' arm      3' arm
25964 - 130932 90 19.5 -27.1 NP_958038 5' arm      3' arm
25963 - 130081 90 21 -27.2 NP_958037 5' arm      3' arm
25929 - 110137 90 22 -31 NP_958015 5' arm      3' arm
25934 - 114982 90 19.5 -26.1 NP_958023 5' arm      3' arm
25942 - 118324 86 19 -24.9 5' arm      3' arm
25940 - 117740 89 20 -27.7 NP_958026 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.