miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11387	-	68769	90	30.5	-26.14			5' arm      3' arm
11335	+	49199	89	28.5	-35.6			5' arm      3' arm
11336	+	49369	89	25.5	-32.9			5' arm      3' arm
11314	+	7466	89	25	-21.8	NP_203311		5' arm      3' arm
11378	-	59155	89	24.5	-20.71	NP_203371		5' arm      3' arm
11386	-	68649	89	24.5	-35.6			5' arm      3' arm
11366	-	17675	90	24	-27.6	NP_203326		5' arm      3' arm
11393	-	80912	88	23.5	-22	NP_203394		5' arm      3' arm
11360	-	3902	89	23.5	-23.2			5' arm      3' arm
11368	-	37925	87	23.5	-27.1			5' arm      3' arm
11379	-	61720	90	23.5	-19.7	NP_203374		5' arm      3' arm
11352	+	94370	89	23	-24.4	NP_203400		5' arm      3' arm
11344	+	73191	90	23	-24.8	NP_203389		5' arm      3' arm
11321	+	25980	87	23	-20.4	NP_203333		5' arm      3' arm
11315	+	7826	89	23	-22.6	NP_203310		5' arm      3' arm
11390	-	75333	80	22.5	-25.7	NP_203389		5' arm      3' arm
11394	-	81924	89	22.5	-25.7	NP_203394		5' arm      3' arm
11357	+	104674	84	22.5	-22.5	NP_203412		5' arm      3' arm
11392	-	80113	87	22.5	-23.1	NP_203394		5' arm      3' arm
11348	+	81732	90	22.5	-26	NP_203394		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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