miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11329	+	41683	90	22.5	-19.4	NP_203357		5' arm      3' arm
11392	-	80113	87	22.5	-23.1	NP_203394		5' arm      3' arm
11354	+	97847	90	22	-22.1	NP_203403		5' arm      3' arm
11372	-	49411	81	22	-25.6			5' arm      3' arm
11400	-	100379	87	22	-20.2	NP_203407		5' arm      3' arm
11373	-	49540	89	22	-30			5' arm      3' arm
11371	-	49241	81	22	-25.6			5' arm      3' arm
11370	-	47808	90	22	-21.2	NP_203363		5' arm      3' arm
11337	+	49582	89	22	-23.7			5' arm      3' arm
11330	+	42125	89	21.5	-24.1	NP_203357		5' arm      3' arm
11353	+	97691	88	21.5	-27.1	NP_203403		5' arm      3' arm
11365	-	15832	90	21.5	-21.9	NP_203322		5' arm      3' arm
11327	+	40575	90	21.5	-21.8	NP_203354		5' arm      3' arm
11389	-	70709	90	21.5	-24.62	NP_203384		5' arm      3' arm
11362	-	12339	87	21.5	-22.4	NP_203317		5' arm      3' arm
11396	-	86084	85	21.5	-19.42	NP_203395		5' arm      3' arm
11345	+	73492	87	21.5	-19.6	NP_203389		5' arm      3' arm
11381	-	64040	90	21.5	-20.3	NP_203377		5' arm      3' arm
11355	+	100609	90	21.5	-20.8	NP_203407		5' arm      3' arm
11356	+	103712	89	21.5	-22.3	NP_203410		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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