miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
342	+	1636	87	21	-26.4	AP_000300		5' arm      3' arm
343	+	2120	89	19.5	-21.2	AP_000301		5' arm      3' arm
344	+	3476	90	22.5	-23	AP_000302		5' arm      3' arm
345	+	4034	90	20.5	-24.8	AP_000303		5' arm      3' arm
346	+	4598	89	20.5	-25.5			5' arm      3' arm
347	+	4831	89	19	-24	AP_000303		5' arm      3' arm
348	+	5063	86	21	-22.7	AP_000303		5' arm      3' arm
349	+	5317	89	21	-22.3	AP_000304		5' arm      3' arm
350	+	5987	87	21.5	-19.8	AP_000304		5' arm      3' arm
351	+	6130	90	24	-23.4	AP_000304		5' arm      3' arm
352	+	6681	90	19.5	-22.6	AP_000304		5' arm      3' arm
353	+	8100	87	20	-20.8	AP_000304		5' arm      3' arm
354	+	8392	90	21	-19.5	AP_000304		5' arm      3' arm
355	+	8520	90	21	-24.5	AP_000304		5' arm      3' arm
356	+	9705	90	19.5	-25.6	AP_000305		5' arm      3' arm
357	+	10163	89	20.5	-31.9	AP_000305		5' arm      3' arm
358	+	11556	90	22	-22	AP_000306		5' arm      3' arm
359	+	11724	87	19	-23.6	AP_000306		5' arm      3' arm
360	+	12048	88	20	-22.8	AP_000307		5' arm      3' arm
361	+	12205	87	19.5	-20.4	AP_000307		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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