miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
364	+	15017	88	19	-19.6	AP_000308		5' arm      3' arm
381	-	5861	80	19	-23.3	AP_000304		5' arm      3' arm
382	-	8849	90	19	-25.6	AP_000305		5' arm      3' arm
394	-	14880	90	19	-19.7	AP_000308		5' arm      3' arm
399	-	16943	88	19	-20.2	AP_000310		5' arm      3' arm
371	+	23310	81	19	-25.2	AP_000315		5' arm      3' arm
411	-	22466	90	19	-22.1	AP_000315		5' arm      3' arm
410	-	22147	90	19	-21.9	AP_000315		5' arm      3' arm
359	+	11724	87	19	-23.6	AP_000306		5' arm      3' arm
347	+	4831	89	19	-24	AP_000303		5' arm      3' arm
365	+	18461	85	19	-21	AP_000313		5' arm      3' arm
395	-	15236	90	19	-23.3	AP_000308		5' arm      3' arm
387	-	12286	86	19	-20.2	AP_000307		5' arm      3' arm
403	-	20069	88	19.5	-24.9	AP_000313		5' arm      3' arm
362	+	12967	90	19.5	-27.8	AP_000307		5' arm      3' arm
377	+	33785	86	19.5	-21.9	AP_000332		5' arm      3' arm
363	+	13184	89	19.5	-24.8	AP_000307		5' arm      3' arm
352	+	6681	90	19.5	-22.6	AP_000304		5' arm      3' arm
405	-	20526	90	19.5	-20.2	AP_000313		5' arm      3' arm
413	-	22953	82	19.5	-22.2	AP_000315		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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