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GenBank Identifier | RefSeq Acc. | Name |
56160634 | AC_000011.1 | Simian adenovirus 25 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
408 | - | 21167 | 87 | 22.5 | -27.4 | 5' arm 3' arm | |||
423 | - | 36195 | 89 | 23 | -21.9 | 5' arm 3' arm | |||
346 | + | 4598 | 89 | 20.5 | -25.5 | 5' arm 3' arm | |||
424 | - | 36446 | 89 | 25.5 | -24.3 | 5' arm 3' arm | |||
379 | - | 1049 | 89 | 20.5 | -23.7 | AP_000299 | 5' arm 3' arm | ||
342 | + | 1636 | 87 | 21 | -26.4 | AP_000300 | 5' arm 3' arm | ||
343 | + | 2120 | 89 | 19.5 | -21.2 | AP_000301 | 5' arm 3' arm | ||
380 | - | 2097 | 90 | 24.5 | -22.6 | AP_000301 | 5' arm 3' arm | ||
344 | + | 3476 | 90 | 22.5 | -23 | AP_000302 | 5' arm 3' arm | ||
348 | + | 5063 | 86 | 21 | -22.7 | AP_000303 | 5' arm 3' arm | ||
345 | + | 4034 | 90 | 20.5 | -24.8 | AP_000303 | 5' arm 3' arm | ||
347 | + | 4831 | 89 | 19 | -24 | AP_000303 | 5' arm 3' arm | ||
349 | + | 5317 | 89 | 21 | -22.3 | AP_000304 | 5' arm 3' arm | ||
351 | + | 6130 | 90 | 24 | -23.4 | AP_000304 | 5' arm 3' arm | ||
381 | - | 5861 | 80 | 19 | -23.3 | AP_000304 | 5' arm 3' arm | ||
350 | + | 5987 | 87 | 21.5 | -19.8 | AP_000304 | 5' arm 3' arm | ||
352 | + | 6681 | 90 | 19.5 | -22.6 | AP_000304 | 5' arm 3' arm | ||
353 | + | 8100 | 87 | 20 | -20.8 | AP_000304 | 5' arm 3' arm | ||
355 | + | 8520 | 90 | 21 | -24.5 | AP_000304 | 5' arm 3' arm | ||
354 | + | 8392 | 90 | 21 | -19.5 | AP_000304 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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