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GenBank Identifier | RefSeq Acc. | Name |
56160634 | AC_000011.1 | Simian adenovirus 25 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
357 | + | 10163 | 89 | 20.5 | -31.9 | AP_000305 | 5' arm 3' arm | ||
412 | - | 22693 | 87 | 20 | -31.2 | AP_000315 | 5' arm 3' arm | ||
404 | - | 20188 | 89 | 20 | -30.9 | AP_000313 | 5' arm 3' arm | ||
369 | + | 23059 | 90 | 27 | -30.7 | AP_000315 | 5' arm 3' arm | ||
393 | - | 13270 | 89 | 20 | -30.5 | AP_000307 | 5' arm 3' arm | ||
385 | - | 11565 | 88 | 20 | -29.6 | AP_000306 | 5' arm 3' arm | ||
390 | - | 12794 | 89 | 21.5 | -29.6 | AP_000307 | 5' arm 3' arm | ||
416 | - | 25156 | 83 | 20 | -29 | AP_000316 | 5' arm 3' arm | ||
362 | + | 12967 | 90 | 19.5 | -27.8 | AP_000307 | 5' arm 3' arm | ||
370 | + | 23209 | 88 | 22 | -27.7 | AP_000315 | 5' arm 3' arm | ||
408 | - | 21167 | 87 | 22.5 | -27.4 | 5' arm 3' arm | |||
374 | + | 24400 | 87 | 20.5 | -27.1 | AP_000316 | 5' arm 3' arm | ||
392 | - | 13117 | 90 | 21 | -26.7 | AP_000307 | 5' arm 3' arm | ||
407 | - | 20978 | 90 | 20 | -26.6 | AP_000313 | 5' arm 3' arm | ||
342 | + | 1636 | 87 | 21 | -26.4 | AP_000300 | 5' arm 3' arm | ||
366 | + | 21117 | 81 | 19.5 | -26.2 | AP_000314 | 5' arm 3' arm | ||
373 | + | 24155 | 90 | 20 | -25.64 | AP_000316 | 5' arm 3' arm | ||
356 | + | 9705 | 90 | 19.5 | -25.6 | AP_000305 | 5' arm 3' arm | ||
382 | - | 8849 | 90 | 19 | -25.6 | AP_000305 | 5' arm 3' arm | ||
346 | + | 4598 | 89 | 20.5 | -25.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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