miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
353	+	8100	87	20	-20.8	AP_000304		5' arm      3' arm
365	+	18461	85	19	-21	AP_000313		5' arm      3' arm
343	+	2120	89	19.5	-21.2	AP_000301		5' arm      3' arm
406	-	20844	88	23	-21.5	AP_000313		5' arm      3' arm
397	-	16550	88	22	-21.8	AP_000310		5' arm      3' arm
423	-	36195	89	23	-21.9			5' arm      3' arm
377	+	33785	86	19.5	-21.9	AP_000332		5' arm      3' arm
410	-	22147	90	19	-21.9	AP_000315		5' arm      3' arm
358	+	11556	90	22	-22	AP_000306		5' arm      3' arm
414	-	23480	90	22.5	-22	AP_000316		5' arm      3' arm
411	-	22466	90	19	-22.1	AP_000315		5' arm      3' arm
413	-	22953	82	19.5	-22.2	AP_000315		5' arm      3' arm
388	-	12375	89	24	-22.3	AP_000307		5' arm      3' arm
349	+	5317	89	21	-22.3	AP_000304		5' arm      3' arm
367	+	22377	90	22.5	-22.5	AP_000315		5' arm      3' arm
383	-	9112	89	20	-22.6	AP_000305		5' arm      3' arm
380	-	2097	90	24.5	-22.6	AP_000301		5' arm      3' arm
352	+	6681	90	19.5	-22.6	AP_000304		5' arm      3' arm
348	+	5063	86	21	-22.7	AP_000303		5' arm      3' arm
409	-	21628	87	20.5	-22.8	AP_000314		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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