miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
389	-	12535	86	21.5	-19.8	AP_000307		5' arm      3' arm
401	-	17990	88	21.5	-25.2	AP_000312		5' arm      3' arm
420	-	26613	90	21.5	-23.2	AP_000319		5' arm      3' arm
375	+	27823	88	21.5	-20.4	AP_000321		5' arm      3' arm
402	-	19930	89	21.5	-20.2	AP_000313		5' arm      3' arm
386	-	12156	90	21.5	-19.8	AP_000307		5' arm      3' arm
391	-	12964	89	21.5	-19.9	AP_000307		5' arm      3' arm
390	-	12794	89	21.5	-29.6	AP_000307		5' arm      3' arm
342	+	1636	87	21	-26.4	AP_000300		5' arm      3' arm
392	-	13117	90	21	-26.7	AP_000307		5' arm      3' arm
348	+	5063	86	21	-22.7	AP_000303		5' arm      3' arm
355	+	8520	90	21	-24.5	AP_000304		5' arm      3' arm
349	+	5317	89	21	-22.3	AP_000304		5' arm      3' arm
354	+	8392	90	21	-19.5	AP_000304		5' arm      3' arm
409	-	21628	87	20.5	-22.8	AP_000314		5' arm      3' arm
345	+	4034	90	20.5	-24.8	AP_000303		5' arm      3' arm
374	+	24400	87	20.5	-27.1	AP_000316		5' arm      3' arm
346	+	4598	89	20.5	-25.5			5' arm      3' arm
368	+	22594	87	20.5	-22.9	AP_000315		5' arm      3' arm
357	+	10163	89	20.5	-31.9	AP_000305		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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