miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12165	+	39023	89	26.5	-19.7	NP_536403		5' arm      3' arm
12160	+	36490	88	26	-33.1	NP_536399		5' arm      3' arm
12125	+	16172	89	26	-22.9	NP_536375		5' arm      3' arm
12211	-	9718	90	25	-23.8	NP_536371		5' arm      3' arm
12265	-	48008	90	25	-24.8			5' arm      3' arm
12139	+	23660	88	25	-34.9			5' arm      3' arm
12120	+	12808	89	25	-21.6	NP_536371		5' arm      3' arm
12117	+	10924	90	24.5	-24	NP_536371		5' arm      3' arm
12205	-	5611	89	24.5	-27.2	NP_536362		5' arm      3' arm
12247	-	33822	90	24.5	-32.3	NP_536395		5' arm      3' arm
12106	+	6613	90	24	-27.5	NP_536364		5' arm      3' arm
12225	-	19059	88	23.5	-19.8	NP_536377		5' arm      3' arm
12111	+	7787	87	23.5	-24.9	NP_536367		5' arm      3' arm
12115	+	9063	85	23.5	-29.7	NP_536370		5' arm      3' arm
12184	+	47862	89	23	-21.3			5' arm      3' arm
12113	+	8385	87	23	-23.4	NP_536368		5' arm      3' arm
12231	-	22365	90	23	-29.5	NP_536382		5' arm      3' arm
12177	+	45018	84	23	-27.8	NP_536414		5' arm      3' arm
12179	+	46075	90	23	-23.2	NP_536415		5' arm      3' arm
12118	+	11191	85	23	-29.6	NP_536371		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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