miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12134	+	19274	87	21	-20.4	NP_536377		5' arm      3' arm
12131	+	18010	90	20.5	-20.4	NP_536377		5' arm      3' arm
12137	+	21568	89	20	-20.5	NP_536380		5' arm      3' arm
12261	-	44670	89	19.5	-20.5	NP_536414		5' arm      3' arm
12204	-	5500	89	21.5	-20.5	NP_536362		5' arm      3' arm
12201	-	4947	90	20	-20.6	NP_536362		5' arm      3' arm
12167	+	39509	89	20	-20.6	NP_536404		5' arm      3' arm
12127	+	16600	88	21.5	-20.9	NP_536376		5' arm      3' arm
12155	+	34131	90	21.5	-20.9	NP_536395		5' arm      3' arm
12259	-	44307	86	22	-21	NP_536413		5' arm      3' arm
12217	-	11931	86	21.5	-21	NP_536371		5' arm      3' arm
12104	+	5450	89	19.5	-21.1	NP_536362		5' arm      3' arm
12226	-	19804	90	21	-21.2	NP_536377		3' arm
12219	-	12610	90	20.5	-21.2			5' arm      3' arm
12173	+	43292	85	19.5	-21.2	NP_536412		5' arm      3' arm
12190	+	52410	88	21.5	-21.3	NP_536425		5' arm      3' arm
12119	+	12688	90	19	-21.3	NP_536371		5' arm      3' arm
12097	+	901	86	19.5	-21.3	NP_536358		5' arm      3' arm
12184	+	47862	89	23	-21.3			5' arm      3' arm
12240	-	28259	88	19	-21.36	NP_536389		3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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