miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628835 NC_001720.1 Fowl adenovirus A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4319 + 1191 90 23.5 -20.2 NP_043870 5' arm      3' arm
4320 + 1567 89 21 -29.1 5' arm      3' arm
4321 + 2233 90 22.5 -22.6 NP_043871 5' arm      3' arm
4322 + 2950 87 21 -20.7 NP_043872 5' arm      3' arm
4323 + 4001 81 19 -25.1 NP_043874 5' arm      3' arm
4324 + 4146 85 20.5 -22.4 NP_043873 5' arm      3' arm
4325 + 6228 90 23.5 -26.8 NP_043876 5' arm      3' arm
4326 + 6401 89 21 -23.3 NP_043876 5' arm      3' arm
4327 + 6577 90 22.5 -30 NP_043876 5' arm      3' arm
4328 + 7151 88 24.5 -22.8 NP_043878 5' arm      3' arm
4329 + 8237 88 21.5 -23.7 5' arm      3' arm
4330 + 10168 90 19.5 -20.32 5' arm      3' arm
4331 + 10401 90 22.5 -21.5 NP_043879 5' arm      3' arm
4332 + 11472 88 20 -21 NP_043879 5' arm      3' arm
4333 + 11926 90 20.5 -20.3 NP_043879 5' arm      3' arm
4334 + 12054 86 20 -25.2 5' arm      3' arm
4335 + 13277 90 20.5 -25.8 NP_043880 5' arm      3' arm
4336 + 14413 87 21 -21.5 NP_043881 5' arm      3' arm
4337 + 16211 90 19 -20.91 NP_043882 5' arm      3' arm
4338 + 18038 90 19 -19.6 NP_043885 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.