miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4354	-	5090	90	24.5	-24.9	NP_043875		5' arm      3' arm
4383	-	30934	86	24.5	-26.2	NP_043892		5' arm      3' arm
4328	+	7151	88	24.5	-22.8	NP_043878		5' arm      3' arm
4319	+	1191	90	23.5	-20.2	NP_043870		5' arm      3' arm
4325	+	6228	90	23.5	-26.8	NP_043876		5' arm      3' arm
4376	-	28401	86	23.5	-24.6			5' arm      3' arm
4368	-	24274	86	22.5	-31.1	NP_043889		5' arm      3' arm
4321	+	2233	90	22.5	-22.6	NP_043871		5' arm      3' arm
4380	-	28837	89	22.5	-20.8	NP_043891		5' arm      3' arm
4375	-	28222	90	22.5	-22.3			5' arm      3' arm
4331	+	10401	90	22.5	-21.5	NP_043879		5' arm      3' arm
4327	+	6577	90	22.5	-30	NP_043876		5' arm      3' arm
4374	-	26994	87	22.5	-23.2	NP_595044		5' arm      3' arm
4345	+	23031	89	22	-23.3	NP_043888		5' arm      3' arm
4387	-	40313	89	21.5	-19.9	NP_043904		5' arm      3' arm
4373	-	26759	89	21.5	-20.7			5' arm      3' arm
4377	-	28490	88	21.5	-21.3	NP_043891		5' arm      3' arm
4364	-	20197	89	21.5	-21.4	NP_043886		5' arm      3' arm
4384	-	37356	89	21.5	-23.7			5' arm      3' arm
4329	+	8237	88	21.5	-23.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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