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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26564 | - | 19002 | 89 | 19.5 | -20.3 | NP_958686 | 5' arm 3' arm | ||
| 26544 | - | 4234 | 85 | 19 | -20.3 | NP_958677 | 5' arm 3' arm | ||
| 26505 | + | 21064 | 88 | 22 | -20.4 | NP_958690 | 5' arm 3' arm | ||
| 26583 | - | 31156 | 85 | 20 | -20.4 | NP_958701 | 5' arm 3' arm | ||
| 26601 | - | 35934 | 90 | 20 | -20.5 | NP_958709 | 5' arm 3' arm | ||
| 26529 | + | 34169 | 87 | 19.5 | -20.5 | NP_958707 | 5' arm 3' arm | ||
| 26550 | - | 7469 | 80 | 19.5 | -20.6 | NP_958679 | 5' arm 3' arm | ||
| 26606 | - | 37057 | 82 | 23 | -20.7 | NP_958711 | 5' arm 3' arm | ||
| 26615 | - | 39510 | 90 | 19.5 | -20.7 | NP_958715 | 5' arm 3' arm | ||
| 26604 | - | 36731 | 90 | 21.5 | -20.7 | NP_958711 | 5' arm 3' arm | ||
| 26574 | - | 27007 | 86 | 22 | -20.8 | NP_958697 | 5' arm 3' arm | ||
| 26552 | - | 9907 | 90 | 19.5 | -20.8 | NP_958679 | 5' arm 3' arm | ||
| 26474 | + | 12797 | 89 | 20.5 | -20.9 | NP_958680 | 5' arm 3' arm | ||
| 26613 | - | 38816 | 88 | 20.5 | -21 | NP_958712 | 5' arm 3' arm | ||
| 26507 | + | 21763 | 89 | 20.5 | -21.1 | NP_958690 | 5' arm 3' arm | ||
| 26475 | + | 13045 | 90 | 20.5 | -21.3 | NP_958680 | 5' arm 3' arm | ||
| 26479 | + | 13862 | 87 | 21 | -21.3 | NP_958680 | 5' arm 3' arm | ||
| 26510 | + | 22325 | 90 | 20.5 | -21.3 | NP_958690 | 5' arm 3' arm | ||
| 26575 | - | 27357 | 86 | 20.5 | -21.5 | NP_958698 | 5' arm 3' arm | ||
| 26462 | + | 8231 | 84 | 20.5 | -21.6 | NP_958679 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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