miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
32170834 NC_004913.1 Stx1 converting bacteriophage virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
21940 - 21453 89 19 -20.52 NP_859136 5' arm      3' arm
21945 - 37708 88 19 -19.8 NP_859181 5' arm      3' arm
21917 + 21101 82 19 -20.8 NP_859134 5' arm      3' arm
21932 + 55470 86 19 -37.2 NP_859231 5' arm      3' arm
21912 + 15483 87 19 -34.4 NP_859118 5' arm      3' arm
21930 + 52679 87 19 -20.4 NP_859223 5' arm      3' arm
21936 - 8772 90 19 -21.5 NP_859099 5' arm      3' arm
21911 + 12878 90 19.5 -21.5 NP_859112 5' arm      3' arm
21937 - 9143 88 19.5 -21 NP_859099 5' arm      3' arm
21951 - 54365 89 19.5 -21.81 NP_859224 5' arm      3' arm
21918 + 21271 88 19.5 -21.3 NP_859129 5' arm      3' arm
21944 - 36046 90 20 -21.1 NP_859173 5' arm      3' arm
21946 - 39350 89 20 -22.9 NP_859189 5' arm      3' arm
21948 - 46259 90 20 -20.5 NP_859206 5' arm      3' arm
21931 + 55157 90 20 -20.8 NP_859230 5' arm      3' arm
21916 + 19994 82 20 -22 NP_859129 5' arm      3' arm
21952 - 54694 86 20 -26.3 NP_859224 5' arm      3' arm
21913 + 16804 89 20 -23.4 NP_859121 5' arm      3' arm
21915 + 19373 90 20.5 -20.4 NP_859129 5' arm      3' arm
21920 + 26185 86 20.5 -31.6 NP_859129 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.