miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21922	+	26602	89	28.5	-19.6	NP_859129		5' arm      3' arm
21925	+	41042	89	25.5	-27.4	NP_859195		5' arm      3' arm
21923	+	28648	86	24	-29.8	NP_859151		5' arm      3' arm
21924	+	31350	90	24	-23.8			5' arm      3' arm
21943	-	31708	89	23.5	-27.6			5' arm      3' arm
21938	-	11552	89	23.5	-29.31	NP_859109		5' arm      3' arm
21914	+	17594	84	23.5	-23.6	NP_859126		5' arm      3' arm
21921	+	26383	90	23.5	-28.2	NP_859146		5' arm      3' arm
21904	+	3425	89	23	-29.7			5' arm      3' arm
21939	-	20458	88	23	-30.7	NP_859129		5' arm      3' arm
21919	+	22114	88	23	-24.5	NP_859138		5' arm      3' arm
21906	+	6797	89	23	-24.2	NP_859094		5' arm      3' arm
21942	-	25020	90	23	-19.6	NP_859129		5' arm      3' arm
21905	+	4249	88	23	-24	NP_859085		5' arm      3' arm
21950	-	52801	88	23	-23.11	NP_859223		5' arm      3' arm
21947	-	41129	87	23	-26.2	NP_859195		5' arm      3' arm
21907	+	7415	89	22.5	-22.3	NP_859096		5' arm      3' arm
21908	+	8146	87	22	-26	NP_859099		5' arm      3' arm
21929	+	50393	87	21.5	-25.5	NP_859219		5' arm      3' arm
21949	-	48036	88	21.5	-20	NP_859211		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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