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GenBank Identifier | RefSeq Acc. | Name |
29366701 | NC_004665.1 | Pseudomonas phage gh-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
17964 | + | 157 | 90 | 23.5 | -29.4 | 5' arm 3' arm | |||
17992 | + | 36989 | 89 | 21 | -27.7 | 5' arm 3' arm | |||
17993 | + | 37200 | 89 | 22 | -22.3 | 5' arm 3' arm | |||
17994 | - | 528 | 82 | 22.5 | -26.4 | 5' arm 3' arm | |||
17995 | - | 1075 | 90 | 23 | -20.3 | 5' arm 3' arm | |||
17965 | + | 445 | 89 | 22 | -26.1 | 5' arm 3' arm | |||
17963 | + | 57 | 89 | 22 | -22.3 | 5' arm 3' arm | |||
17998 | - | 2570 | 85 | 24.5 | -24.6 | NP_813747 | 5' arm 3' arm | ||
17997 | - | 2253 | 89 | 19.5 | -28.52 | NP_813747 | 5' arm 3' arm | ||
17968 | + | 3525 | 90 | 22.5 | -22 | NP_813747 | 5' arm 3' arm | ||
17967 | + | 3047 | 90 | 21 | -23.3 | NP_813747 | 5' arm 3' arm | ||
18000 | - | 3238 | 87 | 19 | -23.69 | NP_813747 | 5' arm 3' arm | ||
17966 | + | 1830 | 89 | 21 | -25.1 | NP_813747 | 5' arm 3' arm | ||
17999 | - | 2913 | 88 | 20 | -22.4 | NP_813747 | 5' arm 3' arm | ||
17996 | - | 2058 | 85 | 22.5 | -20 | NP_813747 | 5' arm 3' arm | ||
18001 | - | 3836 | 89 | 26 | -26.4 | NP_813748 | 5' arm 3' arm | ||
18002 | - | 3967 | 78 | 21 | -25.02 | NP_813749 | 5' arm 3' arm | ||
17969 | + | 4387 | 86 | 19.5 | -25.3 | NP_813750 | 5' arm 3' arm | ||
18003 | - | 4490 | 90 | 21 | -24.6 | NP_813750 | 5' arm 3' arm | ||
17971 | + | 5199 | 90 | 21 | -21 | NP_813751 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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