miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
17964	+	157	90	23.5	-29.4			5' arm      3' arm
17975	+	9312	86	25	-28.7	NP_813759		5' arm      3' arm
17997	-	2253	89	19.5	-28.52	NP_813747		5' arm      3' arm
17992	+	36989	89	21	-27.7			5' arm      3' arm
17973	+	6463	89	23	-27.1	NP_813752		5' arm      3' arm
17970	+	4952	89	21	-27	NP_813751		5' arm      3' arm
18001	-	3836	89	26	-26.4	NP_813748		5' arm      3' arm
17994	-	528	82	22.5	-26.4			5' arm      3' arm
17965	+	445	89	22	-26.1			5' arm      3' arm
18005	-	6492	86	19	-26	NP_813753		5' arm      3' arm
18031	-	35195	89	19.5	-25.8	NP_813786		5' arm      3' arm
17969	+	4387	86	19.5	-25.3	NP_813750		5' arm      3' arm
17988	+	28537	90	21.5	-25.2	NP_813780		5' arm      3' arm
17966	+	1830	89	21	-25.1	NP_813747		5' arm      3' arm
18002	-	3967	78	21	-25.02	NP_813749		5' arm      3' arm
18023	-	25111	88	23	-24.9	NP_813778		5' arm      3' arm
17972	+	6023	90	20.5	-24.6	NP_813753		5' arm      3' arm
18003	-	4490	90	21	-24.6	NP_813750		5' arm      3' arm
17998	-	2570	85	24.5	-24.6	NP_813747		5' arm      3' arm
17980	+	17059	89	20.5	-24.5	NP_813771		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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