miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366701 NC_004665.1 Pseudomonas phage gh-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18026 - 29171 87 19 -23.4 NP_813780 5' arm      3' arm
18000 - 3238 87 19 -23.69 NP_813747 5' arm      3' arm
17979 + 14880 88 19 -22.3 NP_813766 5' arm      3' arm
18012 - 13688 85 19 -23.4 NP_813764 5' arm      3' arm
18010 - 11701 90 19 -21.9 NP_813762 5' arm      3' arm
18005 - 6492 86 19 -26 NP_813753 5' arm      3' arm
17978 + 13670 88 19 -23.8 NP_813764 5' arm      3' arm
17989 + 30055 90 19 -22.9 NP_813780 5' arm      3' arm
18031 - 35195 89 19.5 -25.8 NP_813786 5' arm      3' arm
18011 - 12011 90 19.5 -19.5 NP_813763 5' arm      3' arm
17983 + 18788 85 19.5 -21.6 NP_813772 5' arm      3' arm
17997 - 2253 89 19.5 -28.52 NP_813747 5' arm      3' arm
17985 + 22311 88 19.5 -23.2 NP_813776 5' arm      3' arm
17984 + 19271 90 19.5 -20.4 NP_813773 5' arm      3' arm
18009 - 9811 87 19.5 -20 NP_813760 5' arm      3' arm
17969 + 4387 86 19.5 -25.3 NP_813750 5' arm      3' arm
18025 - 29005 88 19.5 -21.9 NP_813780 5' arm      3' arm
18019 - 21866 86 20 -21.4 NP_813776 5' arm      3' arm
17976 + 9756 90 20 -19.8 NP_813760 5' arm      3' arm
17999 - 2913 88 20 -22.4 NP_813747 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.