miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366701 NC_004665.1 Pseudomonas phage gh-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17986 + 25095 87 21 -22.3 NP_813778 5' arm      3' arm
18030 - 34639 83 21 -20.7 NP_813785 5' arm      3' arm
17988 + 28537 90 21.5 -25.2 NP_813780 5' arm      3' arm
18006 - 7240 88 21.5 -21.1 NP_813755 5' arm      3' arm
17982 + 18200 89 21.5 -20.9 NP_813772 5' arm      3' arm
17991 + 33727 88 21.5 -20.5 NP_813782 5' arm      3' arm
17987 + 25824 89 21.5 -22.2 NP_813779 5' arm      3' arm
18013 - 15964 88 21.5 -20.5 NP_813767 5' arm      3' arm
17965 + 445 89 22 -26.1 5' arm      3' arm
17993 + 37200 89 22 -22.3 5' arm      3' arm
17963 + 57 89 22 -22.3 5' arm      3' arm
17968 + 3525 90 22.5 -22 NP_813747 5' arm      3' arm
18028 - 32831 85 22.5 -21.6 NP_813781 5' arm      3' arm
17977 + 12667 90 22.5 -21.4 NP_813764 5' arm      3' arm
17996 - 2058 85 22.5 -20 NP_813747 5' arm      3' arm
17994 - 528 82 22.5 -26.4 5' arm      3' arm
17981 + 17964 90 22.5 -23.5 NP_813772 5' arm      3' arm
17973 + 6463 89 23 -27.1 NP_813752 5' arm      3' arm
18021 - 23071 87 23 -22.2 NP_813776 5' arm      3' arm
18023 - 25111 88 23 -24.9 NP_813778 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.