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GenBank Identifier | RefSeq Acc. | Name |
33300811 | NC_005045.1 | Bacteriophage phiKMV |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22266 | + | 25209 | 80 | 29.5 | -31.6 | 5' arm 3' arm | |||
22244 | + | 7837 | 90 | 25.5 | -28.3 | NP_877453 | 5' arm 3' arm | ||
22368 | - | 34706 | 86 | 25 | -29.4 | NP_877476 | 5' arm 3' arm | ||
22276 | + | 32137 | 88 | 25 | -21.2 | NP_877476 | 5' arm 3' arm | ||
22357 | - | 29991 | 87 | 24.5 | -29.2 | NP_877475 | 5' arm 3' arm | ||
22313 | - | 10939 | 90 | 24.5 | -21.8 | NP_877456 | 5' arm 3' arm | ||
22321 | - | 14839 | 90 | 23.5 | -23.4 | NP_877460 | 5' arm 3' arm | ||
22372 | - | 37431 | 81 | 23.5 | -25.7 | NP_877479 | 5' arm 3' arm | ||
22233 | + | 748 | 88 | 23 | -19.5 | 5' arm 3' arm | |||
22361 | - | 32650 | 90 | 23 | -25 | NP_877476 | 5' arm 3' arm | ||
22261 | + | 21645 | 89 | 23 | -30.9 | NP_877469 | 5' arm 3' arm | ||
22332 | - | 18471 | 88 | 23 | -23 | NP_877465 | 5' arm 3' arm | ||
22323 | - | 15843 | 89 | 22.5 | -27.9 | NP_877461 | 5' arm 3' arm | ||
22363 | - | 33673 | 88 | 22.5 | -30.7 | NP_877476 | 5' arm 3' arm | ||
22247 | + | 11043 | 88 | 22.5 | -27.5 | NP_877457 | 5' arm 3' arm | ||
22299 | - | 5140 | 90 | 22.5 | -36.8 | 5' arm 3' arm | |||
22334 | - | 18838 | 89 | 22.5 | -24.7 | NP_877465 | 5' arm 3' arm | ||
22344 | - | 24169 | 89 | 22.5 | -26.3 | 5' arm 3' arm | |||
22235 | + | 1664 | 89 | 22.5 | -30.4 | 5' arm 3' arm | |||
22259 | + | 16723 | 90 | 22 | -21.1 | NP_877463 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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