miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22266	+	25209	80	29.5	-31.6			5' arm      3' arm
22244	+	7837	90	25.5	-28.3	NP_877453		5' arm      3' arm
22368	-	34706	86	25	-29.4	NP_877476		5' arm      3' arm
22276	+	32137	88	25	-21.2	NP_877476		5' arm      3' arm
22357	-	29991	87	24.5	-29.2	NP_877475		5' arm      3' arm
22313	-	10939	90	24.5	-21.8	NP_877456		5' arm      3' arm
22372	-	37431	81	23.5	-25.7	NP_877479		5' arm      3' arm
22321	-	14839	90	23.5	-23.4	NP_877460		5' arm      3' arm
22332	-	18471	88	23	-23	NP_877465		5' arm      3' arm
22361	-	32650	90	23	-25	NP_877476		5' arm      3' arm
22233	+	748	88	23	-19.5			5' arm      3' arm
22261	+	21645	89	23	-30.9	NP_877469		5' arm      3' arm
22334	-	18838	89	22.5	-24.7	NP_877465		5' arm      3' arm
22235	+	1664	89	22.5	-30.4			5' arm      3' arm
22363	-	33673	88	22.5	-30.7	NP_877476		5' arm      3' arm
22323	-	15843	89	22.5	-27.9	NP_877461		5' arm      3' arm
22247	+	11043	88	22.5	-27.5	NP_877457		5' arm      3' arm
22344	-	24169	89	22.5	-26.3			5' arm      3' arm
22299	-	5140	90	22.5	-36.8			5' arm      3' arm
22354	-	28718	89	22	-33.9	NP_877474		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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