miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
33300811 NC_005045.1 Bacteriophage phiKMV

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22266 + 25209 80 29.5 -31.6 5' arm      3' arm
22244 + 7837 90 25.5 -28.3 NP_877453 5' arm      3' arm
22368 - 34706 86 25 -29.4 NP_877476 5' arm      3' arm
22276 + 32137 88 25 -21.2 NP_877476 5' arm      3' arm
22357 - 29991 87 24.5 -29.2 NP_877475 5' arm      3' arm
22313 - 10939 90 24.5 -21.8 NP_877456 5' arm      3' arm
22321 - 14839 90 23.5 -23.4 NP_877460 5' arm      3' arm
22372 - 37431 81 23.5 -25.7 NP_877479 5' arm      3' arm
22233 + 748 88 23 -19.5 5' arm      3' arm
22361 - 32650 90 23 -25 NP_877476 5' arm      3' arm
22261 + 21645 89 23 -30.9 NP_877469 5' arm      3' arm
22332 - 18471 88 23 -23 NP_877465 5' arm      3' arm
22323 - 15843 89 22.5 -27.9 NP_877461 5' arm      3' arm
22363 - 33673 88 22.5 -30.7 NP_877476 5' arm      3' arm
22247 + 11043 88 22.5 -27.5 NP_877457 5' arm      3' arm
22299 - 5140 90 22.5 -36.8 5' arm      3' arm
22334 - 18838 89 22.5 -24.7 NP_877465 5' arm      3' arm
22344 - 24169 89 22.5 -26.3 5' arm      3' arm
22235 + 1664 89 22.5 -30.4 5' arm      3' arm
22259 + 16723 90 22 -21.1 NP_877463 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.