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| GenBank Identifier | RefSeq Acc. | Name |
| 29566193 | NC_004684.1 | Mycobacteriophage Rosebush virion |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 18977 | + | 1339 | 90 | 20.5 | -24.5 | NP_817763 | 5' arm 3' arm | ||
| 19123 | - | 1192 | 90 | 21 | -25.9 | NP_817763 | 5' arm 3' arm | ||
| 19124 | - | 2273 | 86 | 23.5 | -20.2 | NP_817764 | 5' arm 3' arm | ||
| 18978 | + | 2903 | 90 | 22.5 | -22.9 | NP_817765 | 5' arm 3' arm | ||
| 19125 | - | 3082 | 87 | 20.5 | -24.3 | NP_817765 | 5' arm 3' arm | ||
| 18980 | + | 3496 | 88 | 23 | -21.2 | NP_817766 | 5' arm 3' arm | ||
| 18979 | + | 3086 | 79 | 19.5 | -31.7 | NP_817766 | 5' arm 3' arm | ||
| 18981 | + | 4028 | 90 | 21 | -29.2 | NP_817767 | 5' arm 3' arm | ||
| 19126 | - | 3865 | 84 | 19 | -26 | NP_817767 | 5' arm 3' arm | ||
| 19127 | - | 3980 | 87 | 20.5 | -21.6 | NP_817767 | 5' arm 3' arm | ||
| 19130 | - | 5807 | 88 | 19.5 | -26.8 | NP_817768 | 5' arm 3' arm | ||
| 19129 | - | 5154 | 90 | 20.5 | -28.1 | NP_817768 | 5' arm 3' arm | ||
| 19128 | - | 4667 | 88 | 23 | -22.6 | NP_817768 | 5' arm 3' arm | ||
| 18984 | + | 6388 | 89 | 23.5 | -30.5 | NP_817769 | 5' arm 3' arm | ||
| 18982 | + | 6116 | 89 | 23 | -27.1 | NP_817769 | 5' arm 3' arm | ||
| 18983 | + | 6224 | 87 | 21.5 | -21.3 | NP_817769 | 5' arm 3' arm | ||
| 19131 | - | 6733 | 90 | 20.5 | -21.9 | NP_817770 | 5' arm 3' arm | ||
| 19133 | - | 7038 | 90 | 23.5 | -25.8 | NP_817770 | 5' arm 3' arm | ||
| 19134 | - | 7188 | 90 | 24.5 | -21.2 | NP_817770 | 5' arm 3' arm | ||
| 19132 | - | 6873 | 89 | 21 | -26.1 | NP_817770 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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