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| GenBank Identifier | RefSeq Acc. | Name |
| 29566193 | NC_004684.1 | Mycobacteriophage Rosebush virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19013 | + | 22838 | 90 | 22.5 | -32.1 | NP_817790 | 5' arm 3' arm | ||
| 19213 | - | 39444 | 90 | 20.5 | -32.1 | NP_817804 | 5' arm 3' arm | ||
| 19098 | + | 57377 | 89 | 21 | -32 | 5' arm 3' arm | |||
| 18979 | + | 3086 | 79 | 19.5 | -31.7 | NP_817766 | 5' arm 3' arm | ||
| 19110 | + | 63746 | 89 | 23.5 | -31.7 | NP_817843 | 5' arm 3' arm | ||
| 19180 | - | 28242 | 90 | 19 | -31.6 | NP_817791 | 5' arm 3' arm | ||
| 19021 | + | 28034 | 87 | 21.5 | -31.4 | NP_817791 | 5' arm 3' arm | ||
| 19045 | + | 38815 | 83 | 20 | -31.3 | NP_817803 | 5' arm 3' arm | ||
| 19155 | - | 18435 | 90 | 23 | -31.3 | NP_817782 | 5' arm 3' arm | ||
| 19119 | + | 67121 | 90 | 24.5 | -31.1 | NP_817851 | 5' arm 3' arm | ||
| 19050 | + | 39962 | 89 | 23 | -31.1 | 5' arm 3' arm | |||
| 18995 | + | 13626 | 89 | 21.5 | -31.1 | NP_817776 | 5' arm 3' arm | ||
| 19094 | + | 55856 | 87 | 20.5 | -31 | NP_817825 | 5' arm 3' arm | ||
| 19008 | + | 21073 | 90 | 19 | -30.5 | NP_817788 | 5' arm 3' arm | ||
| 19015 | + | 24888 | 89 | 19.5 | -30.5 | NP_817790 | 5' arm 3' arm | ||
| 18984 | + | 6388 | 89 | 23.5 | -30.5 | NP_817769 | 5' arm 3' arm | ||
| 19105 | + | 60125 | 90 | 20.5 | -30.4 | NP_817834 | 5' arm 3' arm | ||
| 19066 | + | 46395 | 89 | 26.5 | -30.4 | NP_817811 | 5' arm 3' arm | ||
| 19068 | + | 46718 | 89 | 23 | -30.3 | 5' arm 3' arm | |||
| 19143 | - | 11751 | 87 | 24 | -30.3 | NP_817774 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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