miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23408 - 21392 90 21 -21.5 NP_943806 5' arm      3' arm
23319 + 56727 90 19.5 -21.6 NP_943844 5' arm      3' arm
23504 - 59310 87 20.5 -21.6 NP_943849 5' arm      3' arm
23376 - 9655 86 21 -21.6 NP_943789 5' arm      3' arm
23190 + 3336 87 21 -21.6 NP_943784 5' arm      3' arm
23394 - 16323 90 20.5 -21.6 NP_943798 5' arm      3' arm
23250 + 30992 89 21 -21.6 NP_943810 5' arm      3' arm
23388 - 14796 89 19.5 -21.62 NP_943796 5' arm      3' arm
23473 - 43594 88 19 -21.7 NP_943829 5' arm      3' arm
23374 - 8913 90 23.5 -21.7 NP_943787 5' arm      3' arm
23455 - 36898 90 20.5 -21.8 NP_943818 5' arm      3' arm
23381 - 11491 87 20 -21.8 NP_943790 5' arm      3' arm
23213 + 12453 89 19.5 -21.8 NP_943792 5' arm      3' arm
23297 + 49173 90 24.5 -21.8 5' arm      3' arm
23477 - 45951 89 19 -21.8 NP_943831 5' arm      3' arm
23375 - 9499 89 24 -21.9 5' arm      3' arm
23267 + 38543 89 20.5 -21.9 NP_943821 5' arm      3' arm
23371 - 7273 87 22 -22 NP_943787 5' arm      3' arm
23431 - 29187 88 21.5 -22 NP_943809 5' arm      3' arm
23276 + 41098 83 20 -22 NP_943827 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.