miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23294 + 48387 90 20 -22.4 NP_943834 5' arm      3' arm
23293 + 47754 89 20 -21.2 NP_943833 5' arm      3' arm
23292 + 47223 90 23 -24.6 NP_943832 5' arm      3' arm
23480 - 46942 86 19.5 -33.4 NP_943831 5' arm      3' arm
23477 - 45951 89 19 -21.8 NP_943831 5' arm      3' arm
23290 + 46756 89 21 -22.6 NP_943831 5' arm      3' arm
23476 - 45735 90 20.5 -22.3 NP_943831 5' arm      3' arm
23481 - 47084 90 19.5 -26 NP_943831 5' arm      3' arm
23288 + 46056 89 21.5 -28.6 NP_943831 5' arm      3' arm
23479 - 46758 90 21 -23.3 NP_943831 5' arm      3' arm
23478 - 46144 89 20 -20.8 NP_943831 5' arm      3' arm
23287 + 45675 88 20 -24.5 NP_943831 5' arm      3' arm
23289 + 46543 90 19.5 -22.2 NP_943831 5' arm      3' arm
23291 + 46922 90 20.5 -23.5 NP_943831 5' arm      3' arm
23286 + 44599 88 20.5 -25.2 NP_943830 5' arm      3' arm
23285 + 44285 87 22 -24.3 NP_943830 5' arm      3' arm
23475 - 44750 89 19 -31 NP_943830 5' arm      3' arm
23283 + 44063 90 24 -23.5 NP_943830 5' arm      3' arm
23284 + 44190 90 19 -23.5 NP_943830 5' arm      3' arm
23474 - 44415 84 21 -24.1 NP_943830 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.