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GenBank Identifier | RefSeq Acc. | Name |
38638403 | NC_005259.1 | Mycobacteriophage PG1 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23491 | - | 53893 | 85 | 22.5 | -28.7 | NP_943839 | 5' arm 3' arm | ||
23308 | + | 52500 | 88 | 23.5 | -27.6 | NP_943838 | 5' arm 3' arm | ||
23488 | - | 52306 | 89 | 24.5 | -19.8 | NP_943838 | 5' arm 3' arm | ||
23300 | + | 49985 | 89 | 20 | -28.6 | NP_943837 | 5' arm 3' arm | ||
23301 | + | 50157 | 81 | 19 | -25.5 | NP_943837 | 5' arm 3' arm | ||
23485 | - | 49436 | 87 | 19.5 | -21.3 | NP_943837 | 5' arm 3' arm | ||
23487 | - | 51702 | 88 | 20.5 | -29.8 | NP_943837 | 5' arm 3' arm | ||
23486 | - | 49883 | 84 | 21.5 | -23.5 | NP_943837 | 5' arm 3' arm | ||
23304 | + | 50998 | 90 | 23.5 | -22.8 | NP_943837 | 5' arm 3' arm | ||
23299 | + | 49796 | 90 | 21 | -24.4 | NP_943837 | 5' arm 3' arm | ||
23298 | + | 49655 | 90 | 19 | -23 | NP_943837 | 5' arm 3' arm | ||
23302 | + | 50342 | 90 | 25.5 | -24.8 | NP_943837 | 5' arm 3' arm | ||
23306 | + | 51567 | 90 | 21.5 | -22.2 | NP_943837 | 5' arm 3' arm | ||
23303 | + | 50735 | 89 | 21 | -27.2 | NP_943837 | 5' arm 3' arm | ||
23305 | + | 51374 | 89 | 22 | -24.4 | NP_943837 | 5' arm 3' arm | ||
23296 | + | 49034 | 84 | 21 | -21 | NP_943836 | 5' arm 3' arm | ||
23484 | - | 49014 | 89 | 19.5 | -21.3 | NP_943836 | 5' arm 3' arm | ||
23295 | + | 48926 | 89 | 21 | -20.42 | NP_943836 | 5' arm 3' arm | ||
23483 | - | 48647 | 89 | 20 | -32.3 | NP_943835 | 5' arm 3' arm | ||
23294 | + | 48387 | 90 | 20 | -22.4 | NP_943834 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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