miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22026	+	4942	90	19	-20.8			5' arm      3' arm
22102	-	2559	88	20	-27.1	NP_861589		5' arm      3' arm
22101	-	2431	90	20	-21.4	NP_861589		3' arm
22103	-	3021	90	21	-19.6	NP_861590		5' arm      3' arm
22104	-	3572	86	19.5	-22.5	NP_861591		5' arm      3' arm
22024	+	3427	86	19	-24.1	NP_861591		5' arm      3' arm
22025	+	4581	85	19	-22.3	NP_861594		5' arm      3' arm
22105	-	4533	89	22	-23.3	NP_861594		5' arm      3' arm
22107	-	6825	89	22	-27	NP_861601		5' arm      3' arm
22027	+	6917	89	22	-21.1	NP_861601		5' arm      3' arm
22109	-	8135	88	23.5	-26.7	NP_861603		5' arm      3' arm
22029	+	8955	88	20	-20.7	NP_861604		5' arm      3' arm
22110	-	9697	89	22.5	-21	NP_861605		5' arm      3' arm
22030	+	10412	89	23.5	-21.1	NP_861607		5' arm      3' arm
22111	-	10892	89	21.5	-22.1	NP_861607		5' arm      3' arm
22031	+	11368	87	20	-23.6	NP_861607		5' arm      3' arm
22032	+	11945	83	19.5	-21.5	NP_861607		5' arm      3' arm
22112	-	13466	88	21	-23	NP_861609		3' arm
22114	-	14625	90	20	-20.6	NP_861612		5' arm      3' arm
22036	+	14670	72	21	-24.4	NP_861612		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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