miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22039	+	16479	90	25	-20.31	NP_861616		5' arm      3' arm
22164	-	57800	90	22	-20.4	NP_861668		5' arm      3' arm
22127	-	25448	90	19	-20.5	NP_861626		5' arm      3' arm
22114	-	14625	90	20	-20.6	NP_861612		5' arm      3' arm
22182	-	68449	89	23	-20.7	NP_861679		5' arm      3' arm
22029	+	8955	88	20	-20.7	NP_861604		5' arm      3' arm
22129	-	26714	90	19.5	-20.7	NP_861627		5' arm      3' arm
22026	+	4942	90	19	-20.8			5' arm      3' arm
22072	+	40079	89	23	-20.9	NP_861652		5' arm      3' arm
22143	-	38675	90	21	-21	NP_861650		5' arm      3' arm
22110	-	9697	89	22.5	-21	NP_861605		5' arm      3' arm
22030	+	10412	89	23.5	-21.1	NP_861607		5' arm      3' arm
22027	+	6917	89	22	-21.1	NP_861601		5' arm      3' arm
22151	-	46733	90	22.5	-21.1	NP_861655		5' arm      3' arm
22075	+	44849	89	20.5	-21.1	NP_861654		5' arm      3' arm
22033	+	12627	87	19	-21.2			5' arm      3' arm
22144	-	38787	88	19	-21.3	NP_861650		5' arm      3' arm
22119	-	20967	87	22.5	-21.3			5' arm      3' arm
22116	-	16568	90	23.5	-21.4	NP_861616		3' arm
22073	+	40505	88	21.5	-21.4	NP_861652		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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