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GenBank Identifier | RefSeq Acc. | Name |
32128412 | NC_004902.1 | Xanthomonas oryzae bacteriophage Xp10 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
21840 | + | 197 | 88 | 21.5 | -21.1 | NP_858948 | 5' arm 3' arm | ||
21841 | + | 830 | 90 | 20.5 | -22.6 | NP_858950 | 5' arm 3' arm | ||
21842 | + | 1368 | 85 | 19.5 | -24.7 | NP_858951 | 5' arm 3' arm | ||
21843 | + | 1672 | 89 | 20 | -22.2 | NP_858953 | 5' arm 3' arm | ||
21844 | + | 4182 | 87 | 19.5 | -21.4 | NP_858954 | 5' arm 3' arm | ||
21845 | + | 5542 | 90 | 24 | -25.8 | NP_858956 | 5' arm 3' arm | ||
21846 | + | 6082 | 90 | 21.5 | -22.4 | NP_858956 | 5' arm 3' arm | ||
21847 | + | 6178 | 90 | 23 | -23.7 | NP_858956 | 5' arm 3' arm | ||
21848 | + | 6297 | 84 | 22 | -28 | NP_858956 | 5' arm 3' arm | ||
21849 | + | 6464 | 86 | 20.5 | -21.1 | NP_858956 | 5' arm 3' arm | ||
21850 | + | 6742 | 90 | 21.5 | -21.8 | NP_858957 | 5' arm 3' arm | ||
21851 | + | 6892 | 90 | 19.5 | -19.5 | NP_858957 | 5' arm 3' arm | ||
21852 | + | 7634 | 90 | 19 | -21.5 | NP_858959 | 5' arm 3' arm | ||
21853 | + | 7860 | 88 | 25.5 | -20.8 | NP_858960 | 5' arm 3' arm | ||
21854 | + | 8268 | 89 | 22.5 | -30.5 | NP_858961 | 5' arm 3' arm | ||
21855 | + | 8360 | 90 | 22 | -24.6 | NP_858961 | 5' arm 3' arm | ||
21856 | + | 9486 | 90 | 21 | -30.3 | 5' arm 3' arm | |||
21857 | + | 11016 | 89 | 20 | -26.2 | NP_858965 | 5' arm 3' arm | ||
21858 | + | 13052 | 88 | 21 | -27 | NP_858965 | 5' arm 3' arm | ||
21859 | + | 13847 | 88 | 23 | -21.8 | NP_858967 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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