miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21886	-	25135	90	26	-25.2			5' arm      3' arm
21853	+	7860	88	25.5	-20.8	NP_858960		5' arm      3' arm
21862	+	17973	90	24	-24.5	NP_858969		5' arm      3' arm
21845	+	5542	90	24	-25.8	NP_858956		5' arm      3' arm
21901	-	42787	89	23.5	-22.8			5' arm      3' arm
21859	+	13847	88	23	-21.8	NP_858967		5' arm      3' arm
21847	+	6178	90	23	-23.7	NP_858956		5' arm      3' arm
21863	+	18567	89	23	-24.7	NP_858969		5' arm      3' arm
21854	+	8268	89	22.5	-30.5	NP_858961		5' arm      3' arm
21888	-	27018	90	22	-19.5	NP_858979		5' arm      3' arm
21887	-	26069	89	22	-21.2	NP_858979		5' arm      3' arm
21883	-	21202	88	22	-23.3	NP_858973		5' arm      3' arm
21874	-	1349	89	22	-28.2	NP_858951		5' arm      3' arm
21855	+	8360	90	22	-24.6	NP_858961		5' arm      3' arm
21848	+	6297	84	22	-28	NP_858956		5' arm      3' arm
21864	+	19237	87	22	-28.7			5' arm      3' arm
21882	-	21100	88	22	-23.3	NP_858973		5' arm      3' arm
21884	-	21304	88	22	-23.3	NP_858973		5' arm      3' arm
21867	+	25386	88	21.5	-22.62	NP_858979		5' arm      3' arm
21872	+	36791	90	21.5	-20.3	NP_858991		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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