miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
23972	-	1264	89	20.5	-20.3			5' arm      3' arm
23997	-	17809	84	21	-20.3	NP_944260		5' arm      3' arm
23885	+	8786	89	22.5	-20.3	NP_944243		5' arm      3' arm
24084	-	55093	87	20.5	-20.3	NP_944303		5' arm      3' arm
23915	+	26864	86	19	-20.4			5' arm      3' arm
24074	-	52307	90	21	-20.4	NP_944303		5' arm      3' arm
24043	-	37059	88	20.5	-20.4	NP_944291		5' arm      3' arm
24025	-	29462	90	22.5	-20.41	NP_944280		5' arm      3' arm
23903	+	18898	89	21.5	-20.5	NP_944261		5' arm      3' arm
24087	-	56097	90	22.5	-20.5	NP_944303		5' arm      3' arm
23966	+	62432	87	25.5	-20.5			5' arm      3' arm
23945	+	44304	89	19	-20.5	NP_944298		5' arm      3' arm
24015	-	26737	88	19	-20.5			5' arm      3' arm
24017	-	27594	90	23	-20.6	NP_944280		5' arm      3' arm
23907	+	20605	88	21	-20.7	NP_944264		5' arm      3' arm
23925	+	33467	90	19.5	-20.7	NP_944286		5' arm      3' arm
23928	+	34808	89	19	-20.8	NP_944288		5' arm      3' arm
24053	-	42223	85	19	-20.9	NP_944296		5' arm      3' arm
23963	+	58777	84	21	-21	NP_944303		5' arm      3' arm
23886	+	8892	88	20	-21	NP_944243		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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