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| GenBank Identifier | RefSeq Acc. | Name |
| 47777280 | NC_005263.2 | Burkholderia cenocepacia phage Bcep1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24253 | - | 8419 | 90 | 20.5 | -19.4 | NP_944321 | 5' arm 3' arm | ||
| 24306 | - | 35671 | 89 | 20.5 | -19.5 | NP_944360 | 5' arm 3' arm | ||
| 24157 | + | 16731 | 88 | 20 | -19.5 | NP_944329 | 5' arm 3' arm | ||
| 24122 | + | 5165 | 89 | 20 | -19.5 | NP_944316 | 5' arm 3' arm | ||
| 24191 | + | 30609 | 89 | 21.5 | -19.6 | NP_944354 | 5' arm 3' arm | ||
| 24179 | + | 26975 | 90 | 24.5 | -19.6 | NP_944346 | 5' arm 3' arm | ||
| 24245 | - | 6089 | 89 | 23.5 | -19.6 | NP_944318 | 5' arm 3' arm | ||
| 24152 | + | 14533 | 90 | 21.5 | -19.6 | NP_944327 | 5' arm 3' arm | ||
| 24282 | - | 20607 | 90 | 23 | -19.7 | NP_944335 | 5' arm 3' arm | ||
| 24251 | - | 8153 | 88 | 20 | -19.7 | NP_944321 | 5' arm 3' arm | ||
| 24170 | + | 23554 | 85 | 19.5 | -19.8 | NP_944342 | 5' arm 3' arm | ||
| 24307 | - | 35985 | 90 | 20 | -19.8 | NP_944361 | 5' arm 3' arm | ||
| 24310 | - | 38548 | 82 | 19 | -19.9 | NP_944363 | 5' arm 3' arm | ||
| 24317 | - | 40945 | 90 | 20 | -19.9 | NP_944368 | 5' arm 3' arm | ||
| 24175 | + | 26216 | 88 | 21.5 | -19.9 | NP_944344 | 5' arm 3' arm | ||
| 24123 | + | 5417 | 89 | 19.5 | -20 | NP_944317 | 5' arm 3' arm | ||
| 24265 | - | 12524 | 90 | 20.5 | -20 | NP_944326 | 5' arm 3' arm | ||
| 24321 | - | 44343 | 89 | 21.5 | -20 | NP_944374 | 5' arm 3' arm | ||
| 24126 | + | 6113 | 87 | 19.5 | -20 | NP_944318 | 5' arm 3' arm | ||
| 24171 | + | 24221 | 90 | 24 | -20 | NP_944342 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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