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| GenBank Identifier | RefSeq Acc. | Name |
| 47777280 | NC_005263.2 | Burkholderia cenocepacia phage Bcep1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24130 | + | 7420 | 90 | 20.5 | -29.5 | NP_944320 | 5' arm 3' arm | ||
| 24136 | + | 9394 | 90 | 26 | -29.3 | 5' arm 3' arm | |||
| 24236 | - | 3659 | 85 | 20 | -29.2 | NP_944313 | 5' arm 3' arm | ||
| 24174 | + | 25906 | 89 | 23.5 | -29.2 | NP_944344 | 5' arm 3' arm | ||
| 24183 | + | 27948 | 89 | 23.5 | -29 | NP_944349 | 5' arm 3' arm | ||
| 24243 | - | 5782 | 87 | 20 | -28.9 | 5' arm 3' arm | |||
| 24148 | + | 12038 | 90 | 22 | -28.8 | NP_944325 | 5' arm 3' arm | ||
| 24298 | - | 30555 | 89 | 20.5 | -28.8 | NP_944354 | 5' arm 3' arm | ||
| 24285 | - | 22117 | 90 | 21.5 | -28.7 | NP_944337 | 5' arm 3' arm | ||
| 24223 | + | 42903 | 89 | 19.5 | -28.7 | NP_944370 | 5' arm 3' arm | ||
| 24151 | + | 13851 | 81 | 19 | -28.6 | NP_944326 | 5' arm 3' arm | ||
| 24208 | + | 37454 | 86 | 19.5 | -28.5 | NP_944363 | 5' arm 3' arm | ||
| 24203 | + | 35477 | 85 | 23.5 | -28.5 | NP_944360 | 5' arm 3' arm | ||
| 24326 | - | 45553 | 83 | 22.5 | -28.4 | NP_944374 | 5' arm 3' arm | ||
| 24205 | + | 36011 | 87 | 22 | -28.3 | NP_944361 | 5' arm 3' arm | ||
| 24190 | + | 30202 | 89 | 24 | -28.3 | NP_944354 | 5' arm 3' arm | ||
| 24213 | + | 38469 | 86 | 21 | -28.3 | NP_944363 | 5' arm 3' arm | ||
| 24221 | + | 41495 | 89 | 19 | -28.3 | NP_944368 | 5' arm 3' arm | ||
| 24198 | + | 33945 | 87 | 19.5 | -28.2 | NP_944359 | 5' arm 3' arm | ||
| 24192 | + | 31457 | 88 | 23 | -28 | NP_944354 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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