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| GenBank Identifier | RefSeq Acc. | Name |
| 47777280 | NC_005263.2 | Burkholderia cenocepacia phage Bcep1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24233 | - | 2892 | 87 | 21.5 | -20.7 | NP_944312 | 5' arm 3' arm | ||
| 24234 | - | 3082 | 90 | 19.5 | -22.1 | NP_944312 | 5' arm 3' arm | ||
| 24236 | - | 3659 | 85 | 20 | -29.2 | NP_944313 | 5' arm 3' arm | ||
| 24117 | + | 3512 | 90 | 20 | -26.9 | NP_944313 | 5' arm 3' arm | ||
| 24118 | + | 3729 | 88 | 25.5 | -26.2 | NP_944313 | 5' arm 3' arm | ||
| 24237 | - | 4156 | 87 | 22 | -20.8 | NP_944314 | 5' arm 3' arm | ||
| 24119 | + | 3876 | 90 | 23 | -23 | NP_944314 | 5' arm 3' arm | ||
| 24238 | - | 4366 | 89 | 22 | -31.6 | NP_944314 | 5' arm 3' arm | ||
| 24120 | + | 4143 | 89 | 20.5 | -23.9 | NP_944314 | 5' arm 3' arm | ||
| 24240 | - | 4825 | 90 | 20 | -22.8 | NP_944315 | 5' arm 3' arm | ||
| 24239 | - | 4468 | 88 | 19.5 | -27.1 | NP_944315 | 5' arm 3' arm | ||
| 24121 | + | 4647 | 89 | 22.5 | -25.5 | NP_944315 | 5' arm 3' arm | ||
| 24122 | + | 5165 | 89 | 20 | -19.5 | NP_944316 | 5' arm 3' arm | ||
| 24241 | - | 5149 | 90 | 23 | -21.9 | NP_944316 | 5' arm 3' arm | ||
| 24123 | + | 5417 | 89 | 19.5 | -20 | NP_944317 | 5' arm 3' arm | ||
| 24124 | + | 5598 | 90 | 20.5 | -23.4 | NP_944317 | 5' arm 3' arm | ||
| 24242 | - | 5584 | 88 | 22 | -26.5 | NP_944317 | 5' arm 3' arm | ||
| 24246 | - | 6360 | 90 | 22.5 | -20.3 | NP_944318 | 5' arm 3' arm | ||
| 24127 | + | 6201 | 90 | 19.5 | -23.53 | NP_944318 | 5' arm 3' arm | ||
| 24126 | + | 6113 | 87 | 19.5 | -20 | NP_944318 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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