miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
46402086 NC_005857.1 Bacteriophage phiKO2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27389 - 50237 89 23 -26.8 YP_006642 5' arm      3' arm
27388 - 50047 87 22 -20.1 YP_006641 5' arm      3' arm
27386 - 47920 86 19 -25.1 YP_006635 5' arm      3' arm
27385 - 47525 90 21 -21.5 YP_006634 5' arm      3' arm
27384 - 46388 82 19 -19.7 YP_006632 5' arm      3' arm
27382 - 45241 86 19 -20.1 YP_006631 5' arm      3' arm
27381 - 40104 89 19.5 -19.9 YP_006618 5' arm      3' arm
27356 + 36936 90 20.5 -27.1 YP_006615 5' arm      3' arm
27355 + 35727 90 22.5 -23.3 YP_006615 5' arm      3' arm
27380 - 38226 90 20 -20 YP_006615 5' arm      3' arm
27378 - 35343 90 19 -21.86 YP_006615 5' arm      3' arm
27379 - 36115 90 19 -23.3 YP_006615 5' arm      3' arm
27353 + 32499 89 19 -27 YP_006610 5' arm      3' arm
27351 + 30084 90 21.5 -20.8 YP_006606 5' arm      3' arm
27352 + 30660 89 20 -20.2 YP_006606 5' arm      3' arm
27350 + 26735 82 23 -24.29 YP_006604 5' arm      3' arm
27345 + 18621 89 21 -22.7 YP_006601 5' arm      3' arm
27346 + 18771 88 24.5 -23.7 YP_006601 5' arm      3' arm
27343 + 16544 89 19 -27.2 YP_006601 5' arm      3' arm
27342 + 16367 88 19.5 -24.2 YP_006601 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.