miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
46402086 NC_005857.1 Bacteriophage phiKO2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27371 - 21022 90 21 -19.7 YP_006601 5' arm      3' arm
27363 - 7245 89 19.5 -19.7 YP_006590 5' arm      3' arm
27384 - 46388 82 19 -19.7 YP_006632 5' arm      3' arm
27381 - 40104 89 19.5 -19.9 YP_006618 5' arm      3' arm
27380 - 38226 90 20 -20 YP_006615 5' arm      3' arm
27340 + 10873 87 20.5 -20 YP_006595 5' arm      3' arm
27388 - 50047 87 22 -20.1 YP_006641 5' arm      3' arm
27382 - 45241 86 19 -20.1 YP_006631 5' arm      3' arm
27352 + 30660 89 20 -20.2 YP_006606 5' arm      3' arm
27337 + 7157 89 21.5 -20.4 YP_006590 5' arm      3' arm
27374 - 24848 90 21.5 -20.5 YP_006601 5' arm      3' arm
27349 + 25356 88 19.5 -20.5 YP_006601 5' arm      3' arm
27347 + 22435 88 20.5 -20.5 YP_006601 5' arm      3' arm
27351 + 30084 90 21.5 -20.8 YP_006606 5' arm      3' arm
27369 - 19293 90 21 -20.8 YP_006601 5' arm      3' arm
27361 - 5764 78 21 -20.9 YP_006586 5' arm      3' arm
27358 - 2044 88 19.5 -21.3 YP_006582 5' arm      3' arm
27385 - 47525 90 21 -21.5 YP_006634 5' arm      3' arm
27368 - 17192 88 21.5 -21.5 YP_006601 5' arm      3' arm
27359 - 4043 86 20 -21.7 YP_006585 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.